To fix this, you must call add_subdirectory consecutive times for including multiple sub-directories. I am trying to compile a C++ program using make. From home to enter brian2 from /home/, type in terminal cd ./brian2 or simply, cd brian2 When to say cd /brian2, it tries to navigate the folder at / but there is no folder brian2 Further Clarification as you asked in your comment Christian Mann aptly said it, tilde ~ refers the same thing as /home/brian2 in your case. About Us. I don't think anyone finds what I'm working on interesting. Horror story: only people who smoke could see some monsters. Would it be illegal for me to act as a Civillian Traffic Enforcer? 92239 visits NetBeans IDE - ClassNotFoundException: net.ucanaccess.jdbc.UcanaccessDriver 61744 visits Adding methods to es6 child class 22222 visits I have a problem building my Qt5 project via cmake. Mean that a large amount of nuc has been handled: 100000000 -rm: cannot remove '/home/urbe/Tools/ELECTOR/swag*': No such file or directory Traceback (most recent call last): File "elector.py", line 168, in main() File "elector.py", line 136, in main We could add all swagger doc to this file, but this isn't a very good solution. When the migration is complete, you will access your Teams at stackoverflowteams.com, and they will no longer appear in the left sidebar on stackoverflow.com. Make a wide rectangle out of T-Pipes without loops. main() Whether you are a digital nomad or just looking for flexibility, Shells can put your Linux machine on the device that you want to use. The following works: result = $ (shell docker ps -f name=myapp -q | wc -l) start_docker_myapp: ifeq ($ (strip $ (result)),1) @echo true else @echo false endif .PHONY: start_docker_myapp Share Improve this answer answered May 28, 2019 at 15:01 Stephen Kitt 375k 49 961 1056 Connect and share knowledge within a single location that is structured and easy to search. Instead of checking the output of grep with wc and comparing the number you can simply check grep's exit code. I have edited the makefile. How many characters/pages could WordStar hold on a typical CP/M machine? Not the answer you're looking for? Move the cursor outside of the code tags before you add any additional text to your reply. Browse other questions tagged. The myfile.html file will be created in the Desktop directory. With over 10 pre-installed distros to choose from, the worry-free installation life is here! Why can templates only be implemented in the header file? I don't use that on my HDD, and for bigger torrents I always set the initial download to a mounted temporary directory on the HDD that I'll move the files to. To learn more, see our tips on writing great answers. python3 elector.py -reference example/example_reference.fasta -corrected example/corrected_reads.fasta -uncorrected Sim -threads 46 -simulator simlord -output test2. Asking for help, clarification, or responding to other answers. Site design / logo 2022 Stack Exchange Inc; user contributions licensed under CC BY-SA. You must thus provide test/simulation/simReads (the common prefix of all the files) to the -uncorrected witch. Can someone please advise me what I am doing wrong? Does a creature have to see to be affected by the Fear spell initially since it is an illusion? It's very easy. I am trying to create a Makefile target which first checks to see if my Docker container exists. I don't blame you for downvoting me, just explain what did I do wrong and how can I improve Maybe engine-lib did not successfully build. What is the purpose of .PHONY in a Makefile? Should we burninate the [variations] tag? (I have temporarily commented out the docker commands and replaced them with echo true / false just while I am debugging). with exit code 2]. Fourier transform of a functional derivative. Start here for a quick overview of the site, Detailed answers to any questions you might have, Discuss the workings and policies of this site, Learn more about Stack Overflow the company, Why do you want to implement this in a Makefile? They must be the original reads for which the correction has been provided to the -corrected switch. Then use something like declare -p fdir isufx ictx to see what the variables really contain. FileNotFoundError: [Errno 2] No such file or directory: '/home/urbe/Tools/ELECTOR/msa_canu.fa'. to the PKG_CONFIG_PATH environment variable. the purpose of answering questions, errors, examples in the programming process. Making statements based on opinion; back them up with references or personal experience. It still gives the same error. How to distinguish it-cleft and extraposition? Not the answer you're looking for? When using the "-perfect" option, ELECTOR is assuming the input file represents "perfect / reference" reads, that are, reads without sequencing errors. thank you for the explanation and example this is also very helpful. With over 10 pre-installed distros to choose from, the worry-free installation life is here! How to help a successful high schooler who is failing in college? To fix the fatal error: Adafruit_I2CDevice.h: No such file or directory just add the BusIO library. Can a character use 'Paragon Surge' to gain a feat they temporarily qualify for? SDL/SDL_image.h: No such file or directory. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. You signed in with another tab or window. Found footage movie where teens get superpowers after getting struck by lightning? but it seems busy doing something for last 12 hour which I think is not normal ! The first of the three runs fine but when I try to execute the second one (./make) I get the following error: bash: ./make: No such file or directory. File "/home/urbe/Tools/ELECTOR/computeStats.py", line 444, in computeMetrics Get a virtual cloud desktop with the Linux distro that you want in less than five minutes with Shells! 2. Do US public school students have a First Amendment right to be able to perform sacred music? Please include a copy of those files ( without all the boilerplate comments) in your question. -reference ref.fasta: here you must provide a file containing the reference genome in fasta format @Bodo yes I define the Make variables at the top of the script and yes I take one of the shell variables and do some manipulation on it to create the Make variables..this works ok. Use the keyboard combination Ctrl + X to exit nano. Edit: The structure we're using follows these guidelines: https://github.com/golang-standards/project-layout Member By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. The window return can be removed by simply executing the command: sed -i -e 's/r$//' filename. sh. Which means: "for every file matching the pattern "%.o" in $(BIN_DIR), compile it using the associated $(SRC_DIR)/%.cpp as argument (first dependency) Additional comment: I suspect some missing dependencies: usually, a .c or cpp source file doesn't only depend on the corresponding header file, but might also include other headers from the project. . It reads source files from src directory, puts objects in the build directory, and puts the exe in the bin directory. The invoking this shell script crontab crontab.txt file goes as follows: MAILTO=my_email_address@abc.com. Press "Ctrl + V". There are a few possible causes for the "No such file or directory" error: 1. Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide. Is NordVPN changing my security cerificates? How do I simplify/combine these two methods? Update the post and add the new makefile (with the slash fix and the -o fix) and show us the new error output. Adding a "test.go" file to project root makes Swag output the following error instead: Adding a "main.go" file to project root makes it work just fine. Or create a new MfC application using the wizard like RLWA32 suggested, it will generate a resource.h file. And instead of using $(CC) (and assigning it another value than its default), you can use $(CXX), whose default value is usually g++. Have a question about this project? Does the 0m elevation height of a Digital Elevation Model (Copernicus DEM) correspond to mean sea level? #include <gst/gst.h>. By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. I know that the cronjob to invoke the my_shell_script.sh gets created as running "crontab -l" plus receiving emails proves. Why does it matter that a group of January 6 rioters went to Olive Garden for dinner after the riot? Sign up for a free GitHub account to open an issue and contact its maintainers and the community. In C, why limit || and && to evaluate to booleans? If you don't manage to run ELECTOR on the datasets you want, just describe me what you want to do, and I'll help providing you the command line. Does the 0m elevation height of a Digital Elevation Model (Copernicus DEM) correspond to mean sea level? Stack Overflow for Teams is moving to its own domain! Making statements based on opinion; back them up with references or personal experience. What am I doing wrong including Qt5Sql? The correct line for compiling should look like this: Which means: "for every file matching the pattern "%.o" in $(BIN_DIR), compile it using the associated $(SRC_DIR)/%.cpp as argument (first dependency). Sign up for a free GitHub account to open an issue and contact its maintainers and the community. It is caused by the presence of the Window return character (^M) that is ending the line. 'It was Ben that found it' v 'It was clear that Ben found it', An inf-sup estimate for holomorphic functions, Saving for retirement starting at 68 years old. Find centralized, trusted content and collaborate around the technologies you use most. How did Mendel know if a plant was a homozygous tall (TT), or a heterozygous tall (Tt)? Use sudo. The first number is usually the more helpful of the two because you can use it to locate the error in your sketch. How can I get a huge Saturn-like ringed moon in the sky? Did Dick Cheney run a death squad that killed Benazir Bhutto? You may then run the python3 command as above. ++ /bin/wavfiletool.exe -g -O2 g++: error: /bin/wavfiletool.exe: No such file or directory g++: fatal error: no input files compilation How to create psychedelic experiences for healthy people without drugs? What value for LANG should I use for "sort -u correctly handle Chinese characters? Why are only 2 out of the 3 boosters on Falcon Heavy reused? The text was updated successfully, but these errors were encountered: I can see you used "-perfect /media/urbe/ARCgenomic/toyGenome/toy.fasta". #BITWARDEN # make sure that your domain has dns has a cname or a record set for the subdomain bitwarden # This config file will work as is when using a custom docker network the same as letesencrypt (proxynet). -uncorrected rawReads.fasta: here you must provide a file of uncorrected long reads in fasta format. When you have Grid installed you still should use sqlplus from the RDBMS software home, in your case the xe\bin directory. Another caution: please keep /home where it is intended for: to create a home for users and don't store files in /home itself; user their home to store files for that . You either want to remove the initial slash or you can use an environment variable prefix like SRC_DIR = $(MY_PROJECT_BASE_DIRECTORY)/src. Well occasionally send you account related emails. By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. There may be many shortcomings, please advise. When I try running the following makefile, I get the subsequent error. It said "No listener" was expected, but I didn't remember I had seen the error "No such file or directory" before. How do I simplify/combine these two methods? Some simple commands such as copy, cd, start are internal to the command processor. If the text exceeds the forum's 9000 character limit, save it to a .txt file and post it as an attachment. Perhaps you should add the directory containing `gstreamer-video-1..pc'. The "19" is telling you the length of the line of code in spaces and characters. Connect and share knowledge within a single location that is structured and easy to search. terminated. Making statements based on opinion; back them up with references or personal experience. Linux is a registered trademark of Linus Torvalds. gvdhoorn ( Jun 20 '16 ) 3 Do US public school students have a First Amendment right to be able to perform sacred music? @Bodo - thanks for your comment. I was mostly wondering if it would make a difference - but otherwise if space isn't going to be tight, I don't think it's better. Additional comment: I suspect some missing dependencies: usually, a .c or cpp source file doesn't only depend on the corresponding header file, but might also include other headers from the project. Find centralized, trusted content and collaborate around the technologies you use most. Verb for speaking indirectly to avoid a responsibility. Sign up for a free GitHub account to open an issue and contact its maintainers and the community. to your account, I tried this as well, but ended with following error, ELECTOR git:(master) python3 elector.py -perfect /media/urbe/ARCgenomic/toyGenome/toy.fasta -uncorrected /media/urbe/ARCgenomic/toyGenome/toyLongReads.fasta -corrected /home/urbe/Tools/canu/Linux-amd64/bin/simTest20x/simTest20x.correctedReads.fasta -threads 40 -split -corrector canu, Traceback (most recent call last): Cypress has got a script to clear the registry, so create a Support Case (at top of this page click on "Design Support" and select "Create a Support Case" Bob View solution in original post 0 Likes Reply All forum topics Previous Topic Next Topic 7 Replies Bob_Marlowe Level 10 Nov 07, 2015 04:07 PM 1. For example, if you simulated a set of reads with SimLoRD in the test/simulation/ directory, this directory will contain the following files: simReads.h5, simReads.fastq, and simReads.fastq.sam. What value for LANG should I use for "sort -u correctly handle Chinese characters? Connect and share knowledge within a single location that is structured and easy to search. After doing a rpi-update, I updated my RaspberryPi, to the 5.10.81+ kernel, but I find that the build directory does not exist in this kernel, but it does exist in the 5.10.63+ kernel.. To fix this, I had to do a downgrade with: sudo apt install --reinstall raspberrypi-bootloader raspberrypi-kernel Found footage movie where teens get superpowers after getting struck by lightning? What exactly makes a black hole STAY a black hole? will work. When the migration is complete, you will access your Teams at stackoverflowteams.com, and they will no longer appear in the left sidebar on stackoverflow.com. Unless all of your directories (i.e., BIN_DIR, SRC_DIR) are in the root directory (/) then that is why you're getting the error. 30 * * * * sh ./my_shell_script. It seems like what you provided you the -uncorrected switch (Sim) is an unexisting file, hence the program never stopping. Site design / logo 2022 Stack Exchange Inc; user contributions licensed under CC BY-SA. The problem seems to be when I try to use result in the ifeq statement. thank you for this this is very helpful - also your explanation as I was struggling to follow the GNU documentation. Is a planet-sized magnet a good interstellar weapon? Making location easier for developers with new data primitives, Stop requiring only one assertion per unit test: Multiple assertions are fine, Mobile app infrastructure being decommissioned, 2022 Moderator Election Q&A Question Collection. This article explains how to solve no such file or directory error in Linux Bash. In the Add New Item dialog box, click the Visual C++ folder then choose Resource File (.rc) in the right pane. Irene is an engineered-person, so why does she have a heart problem? So this thing, "Servo.h." You will at some point do something that is irreversible. Cannot open include file: 'unistd.h': No such file or directory. conditional directives arent part of a recipe, so they mustnt start with a tab; conditional directives are evaluated as the Makefile is read, so variables must be assigned previously and cant be target-specific; phony targets should be declared as such. Why can templates only be implemented in the header file? What do the makefile symbols $@ and $< mean? Asking for help, clarification, or responding to other answers. If the desktop directory is ~/Desktop, then cd ~/Desktop will take you there. Fatal error: iostream: No such file or directory in compiling C program using GCC. I prefer women who cook good food, who speak three languages, and who go mountain hiking - what if it is a woman who only has one of the attributes? rev2022.11.3.43003. To subscribe to this RSS feed, copy and paste this URL into your RSS reader. Could this be a MiTM attack? Some coworkers are committing to work overtime for a 1% bonus. Not the answer you're looking for? What value for LANG should I use for "sort -u correctly handle Chinese characters? The file or directory you're trying to access is located in a different directory than the one you're currently in. It's a great, well-documented question, and indicates the issue was already researched. Makefile - no such file or directory error, Making location easier for developers with new data primitives, Stop requiring only one assertion per unit test: Multiple assertions are fine, Mobile app infrastructure being decommissioned, fatal error: linux/smp_lock.h: No such file or directory, make fatal error: openssl/sha.h: No such file or directory, how to fix fatal error: gd.h: No such file or directory, Error "/bin/sh: 1: Syntax error: "(" unexpected" in Makefile, fatal error: kdecoration.h: No such file or directory. So I used the command strace to check what files were being opened. i am trying to fix this .. i checked and found the reason is swag will redirect onlyoffice to a new web address without port , so the "proxy_redirect" is necessary. I run the command cmake .. && make from the directory build and I receive the following error: I have searched this topic briefly, however when I ran this project without Qt5Sql, using only Qt5Core I have no problem at all building the project. -corrected LR.fasta: here you must provide a file of corrected long reads in fasta format Without seeing at least your CMakeLists.txt and package.xml this is going to be difficult to diagnose. 'It was Ben that found it' v 'It was clear that Ben found it'. ./configure. deepstream_app.c:23:10: fatal error: gst/gst.h: No such file or directory. If you wish to use the SimLoRD simulated reads from the toy example along with the -reference switch, you should run this command, as indicated in the README: python3 elector.py -reference example/example_reference.fasta -corrected example/Simlord/correctedReads.fasta -uncorrected example/Simlord/simulatedReads -simulator simlord. jni.h: No such file or directory. Have a question about this project? ./make. How can i extract files in the directory where they're located with the find command? Can the STM32F1 used for ST-LINK on the ST discovery boards be used as a normal chip? privacy statement. [oracle@joetest dbinstall]$ strace -o /tmp/output.txt lsnrctl status An easier way is to add the library in the Library Manager. To solve no such file or directory error in Python, ensure that the file exists in your provided path. Change directory in the terminal to where the Python script is actually located. It says, "servo.h: No such file or directory". Finding features that intersect QgsRectangle but are not equal to themselves using PyQGIS. Indeed, the reads from the -corrected and from the -uncorrected switches have to have matching headers. Please include the entire output from running make including the invocation of make itself and the g++ command that fails. website: http://www.gregjonesdev.com Command line: $ sudo apt-get install software-properties-common $ sudo add-apt-repository ppa:certbot/certbot $ sudo apt-get update $ sudo apt-get install python-certbot-nginx $ certbot --nginx (from Certbox's Guide) For solving this problem, you could right click the Project menu->Add New Item. Get a virtual cloud desktop with the Linux distro that you want in less than five minutes with Shells! File "elector.py", line 136, in main mkdir foo Create file bar.txt inside the foo directory. this behavior happen if the target directory doesn't . Makefile that changes directory then compiles code, Include header file in different directory in c++, attempting to get main.cpp output using the makefile command make. As a result, you may notice that CMake placed some build artifacts in your src/engine directory, which is probably not what you want. Use set -x to see the command that goes to grep, there's an empty filename there. bad interpreter no such file or directory. When the migration is complete, you will access your Teams at stackoverflowteams.com, and they will no longer appear in the left sidebar on stackoverflow.com. Why can we add/substract/cross out chemical equations for Hess law? What should I do? Site design / logo 2022 Stack Exchange Inc; user contributions licensed under CC BY-SA. After reading quite a few tutorials, I have come upon the following make file. This tutorial explains how to fix Can't exec make - No such file or directory at /usr/share/perl/5.14/CPAN/Distribution.pm in Ubuntu & CentOS The offending line in your CMake file is this one: add_subdirectory ( db engine ) When using add_subdirectory in this manner, the second argument becomes the binary directory for the generated content related to db. Already on GitHub? There are two types of paths in Python. Is that command right ? What is the purpose of .PHONY in a Makefile? File "elector.py", line 168, in Press Install and make sure you install the library, including all of its dependencies (other libraries that this library uses). If a creature would die from an equipment unattaching, does that creature die with the effects of the equipment? -uncorrected SimLRPrefix: here you must provide the prefix of the simulated reads files.
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